All software

flashgamma

Code written for personal educational purposes. Performed similarly to proprietary gamma analysis codes internally, but not guaranteed bug-free.

fo-dicom

Targets.NET Standard 2.0. High-performance, asynchronous API. Supports various image compressions. Anonymization, DICOM services.

FRED

Optimizes proton dose and dose-averaged LET (LETd) simultaneously. Incorporates superiorization of feasibility-seeking algorithms. Satisfactory execution times (14-50 min). Well-tested and documented.

FRoG

Independent dose and LETd prediction tool for proton therapy, GPU-accelerated, sandbox environment, supports variable RBE models. Not for clinical use.

GEANT4

i-cycle

Novel algorithm for integrated, multicriterial optimization of beam angles and IMRT profiles. Generates coplanar and noncoplanar plans. Fully automated. Clinical application commenced.

IPOPT

JulianA

Accelerates proton radiotherapy research. Flexible, modular toolkit. Automatic spot weight optimization. Scripting-first approach (no GUI). DICOM support. GPU programming facilitated.

LinacQA

LinaQA (pronounced Linakwa) is a GUI frontend for pylinac and pydicom.

MAAS-PlanScoreCard

A Varian Eclipse scripting plugin to generate a 'scorecard' for treatment plan quality. Assesses plan quality based on pre-defined metrics.

med-imagetools

Aims to provide transparent and reproducible medical image processing pipelines in Python. Focuses on subject-based machine learning and processing DICOMs into deep learning-ready format.

MIPAV

Enables quantitative analysis and visualization of medical images. Cross-platform (Java). Aims to develop computational methods for biomedical data.