Synergistic Image Reconstruction Framework

This software is the main output of SyneRBI, the Collaborative Computational Platform for Synergistic Reconstruction for Biomedical Imaging (formerly CCP PETMR).

How to obtain SIRF

There are multiple ways to obtain a binary version of SIRF, please check them out in our wiki page how to obtain SIRF.

Documentation

See our wiki page with documentation links. Note that some of those links will bring you back to the doc folder in this repository.

Where is everything installed?

SIRF largely follows the usual directory structure with some minor tweaks. When using the default options when building SIRF, you will get (most of the) following, depending what was found/built:

<install-dir>/
    bin/            # executables
    lib/            # libraries
    python/         # Python files
    matlab/         # MATLAB files
    share/SIRF-V.v/ # versioned location (e.g. SIRF-3.0)
       doc/         # doxumentation
          doxygen/  # C++ documentation files generated by doxygen
          examples/ # example scripts
       data/        # data used in example scripts